Medical.Accountants
Regulated by ICAEW
Regulated by ICAEW
Regulated & AML supervision
Regulated & AML supervision
AAT fellow member
AAT fellow member
Certified advisor
Certified advisor
Certified ProAdvisor
Certified ProAdvisor
100+ yearsCombined team experience
Fully insuredUp to £2m indemnity
4.9 out of 5321 Google reviews

Tax guides

MTD Quarterly Update Deadlines for Healthcare Professionals

Every MTD date in one place. Expert UK guide for self-employed clinicians from ICAEW-regulated accountants. Updated for 2026/27.

When are MTD quarterly updates due?

Making Tax Digital for Income Tax applies from 6 April 2026 to sole traders and landlords whose qualifying income (gross self-employment plus property income) is over £50,000, falling to £30,000 from April 2027 and £20,000 from April 2028. PAYE salary does not count. Mtd quarterly update deadlines for healthcare professionals trading through a limited company or a partnership are not brought in yet. We set up compatible software and file the quarterly updates for you.

Fixed fees, specialist healthcare accountants, and every HMRC and NHS Pensions deadline handled.

  • Fixed monthly fee — no surprises
  • Specialist in NHS pension and healthcare tax
  • Onboarding within 48 hours
Get my fixed-fee quoteBook a free 15-min tax review
  • ICAEW & ACCA regulated
  • 5,000+ clients served by ACCOTAX
  • Specialist healthcare accountants

Reviewed by Waqas Sagar ACA FCCA FMAAT, Founder of ACCOTAX, 18+ years' experience · Last reviewed: 8 October 2026 · Updated for the 2026/27 tax year

Medical.Accountants by ACCOTAX, ICAEW/ACCA-regulated chartered accountants, London, serving clients across the UK. Over 5,000 clients served.

Key takeaways

  • Your actual working arrangements determine the tax treatment; choosing a package does not change your employment status.
  • Keep records for each income source and check the official guidance linked to the questions below.
  • Agree the accounts, returns and advisory work you need before accepting a written fixed-fee quote.

Which accountancy support fits your income?

Start with how you are paid. Different income sources can need different accounts, returns and expense checks.

How you workWhat we checkSupport to explore
Employed or umbrella (PAYE)Tax codes, eligible employment expenses and whether a tax return is needed.Healthcare tax refund support
Genuinely self-employedBusiness income and expenses, Self Assessment and MTD eligibility.Healthcare Self Assessment service
Your own limited companyCompany accounts, Corporation Tax, director income and off-payroll status where relevant.Healthcare limited company accounts
PartnershipPractice accounts, allocated profit and each partner’s personal tax position.Healthcare partnership accounts

Sound familiar?

Problems we fix for nurses, midwives and healthcare assistants

  • "I can't decide between umbrella, limited company or self-employed agency work."
  • "My bank shifts are on emergency tax."
  • "I've never claimed my NMC fees, uniform or mileage."
  • "I work for several employers and my tax codes are a mess."
  • "I do aesthetic work and don't know about VAT."

What it's costing you

Leaving it unfixed is rarely free

Overpaid tax
Unclaimed expenses and wrong tax codes mean paying more than you owe, year after year.
HMRC penalties and interest
Late returns attract automatic penalties, plus interest on tax paid late.
Lost evenings
Hours spent on forms, invoices and spreadsheets after a long shift.

General examples — your position depends on your own figures.

How we solve it

What we actually do for you

Refund claims

We check what you've overpaid and claim it back from HMRC.

Agency structure advice

A clear comparison of the ways you can be paid.

Self Assessment

Your return filed correctly, with every allowable expense.

Aesthetic VAT check

We confirm whether your treatments are exempt or standard-rated.

How we help

01

Accounts and tax returns

Year-end accounts and Self Assessment or company returns for mtd quarterly update deadlines for healthcare professionals, filed on time.

02

Fixed-fee advice through the year

Questions answered by your named accountant, without the clock running.

03

Making Tax Digital

Compatible software set up and quarterly updates filed where MTD applies.

04

NHS pension tax

Annual allowance and taper calculations, with Scheme Pays guidance where a charge arises.

What to know before you decide

Quarterly update dates [VERIFY]

This is one of the questions we work through with mtd quarterly update deadlines for healthcare professionals at the start of every engagement. We look at your real income, contracts and records, set out the options in plain English and confirm the work and fee in writing.

Bookkeeping & Making Tax Digital for Doctors & Healthcare Professionals

Final declaration

This is one of the questions we work through with mtd quarterly update deadlines for healthcare professionals at the start of every engagement. We look at your real income, contracts and records, set out the options in plain English and confirm the work and fee in writing.

Software

This is one of the questions we work through with mtd quarterly update deadlines for healthcare professionals at the start of every engagement. We look at your real income, contracts and records, set out the options in plain English and confirm the work and fee in writing.

Your questions answered

What is Making Tax Digital for Income Tax?

Making Tax Digital for Income Tax applies from 6 April 2026 to sole traders and landlords whose qualifying income (gross self-employment plus property income) is over £50,000, falling to £30,000 from April 2027 and £20,000 from April 2028. PAYE salary does not count. Mtd quarterly update deadlines for healthcare professionals trading through a limited company or a partnership are not brought in yet. We set up compatible software and file the quarterly updates for you.

Help with this question: Bookkeeping & Making Tax Digital for Doctors & Healthcare Professionals

Want us to check this for you? Get a free review →

Who needs to follow MTD from April 2026?

Making Tax Digital for Income Tax applies from 6 April 2026 to sole traders and landlords whose qualifying income (gross self-employment plus property income) is over £50,000, falling to £30,000 from April 2027 and £20,000 from April 2028. PAYE salary does not count. Mtd quarterly update deadlines for healthcare professionals trading through a limited company or a partnership are not brought in yet. We set up compatible software and file the quarterly updates for you.

Check the official guidance · www.gov.uk

Help with this question: Bookkeeping & Making Tax Digital for Doctors & Healthcare Professionals

Want us to check this for you? Get a free review →

What counts as qualifying income for MTD?

Making Tax Digital for Income Tax applies from 6 April 2026 to sole traders and landlords whose qualifying income (gross self-employment plus property income) is over £50,000, falling to £30,000 from April 2027 and £20,000 from April 2028. PAYE salary does not count. Mtd quarterly update deadlines for healthcare professionals trading through a limited company or a partnership are not brought in yet. We set up compatible software and file the quarterly updates for you.

Check the official guidance · www.gov.uk

Help with this question: Bookkeeping & Making Tax Digital for Doctors & Healthcare Professionals

Want us to check this for you? Get a free review →

Which software can I use for MTD?

Making Tax Digital for Income Tax applies from 6 April 2026 to sole traders and landlords whose qualifying income (gross self-employment plus property income) is over £50,000, falling to £30,000 from April 2027 and £20,000 from April 2028. PAYE salary does not count. Mtd quarterly update deadlines for healthcare professionals trading through a limited company or a partnership are not brought in yet. We set up compatible software and file the quarterly updates for you.

Check the official guidance · www.gov.uk

Help with this question: Bookkeeping & Making Tax Digital for Doctors & Healthcare Professionals

Want us to check this for you? Get a free review →

Do I still need a tax return under MTD?

Making Tax Digital for Income Tax applies from 6 April 2026 to sole traders and landlords whose qualifying income (gross self-employment plus property income) is over £50,000, falling to £30,000 from April 2027 and £20,000 from April 2028. PAYE salary does not count. Mtd quarterly update deadlines for healthcare professionals trading through a limited company or a partnership are not brought in yet. We set up compatible software and file the quarterly updates for you.

Check the official guidance · www.gov.ukCheck the official guidance · www.gov.uk

Help with this question: Bookkeeping & Making Tax Digital for Doctors & Healthcare Professionals

Help with this question: Self Assessment Tax Returns for Doctors & Healthcare Professionals

Want us to check this for you? Get a free review →

What are the penalties for missing MTD deadlines?

Making Tax Digital for Income Tax applies from 6 April 2026 to sole traders and landlords whose qualifying income (gross self-employment plus property income) is over £50,000, falling to £30,000 from April 2027 and £20,000 from April 2028. PAYE salary does not count. Mtd quarterly update deadlines for healthcare professionals trading through a limited company or a partnership are not brought in yet. We set up compatible software and file the quarterly updates for you.

Check the official guidance · www.gov.ukCheck the official guidance · www.gov.uk

Help with this question: Bookkeeping & Making Tax Digital for Doctors & Healthcare Professionals

Help with this question: HMRC Enquiries, Penalties & Late Returns for Doctors & Healthcare Professionals

Want us to check this for you? Get a free review →

Does MTD apply to doctors with NHS salary and private income?

Making Tax Digital for Income Tax applies from 6 April 2026 to sole traders and landlords whose qualifying income (gross self-employment plus property income) is over £50,000, falling to £30,000 from April 2027 and £20,000 from April 2028. PAYE salary does not count. Mtd quarterly update deadlines for healthcare professionals trading through a limited company or a partnership are not brought in yet. We set up compatible software and file the quarterly updates for you.

Check the official guidance · www.gov.ukCheck the official guidance · www.gov.uk

Help with this question: VAT Registration & Returns for Doctors & Healthcare Professionals

Help with this question: Bookkeeping & Making Tax Digital for Doctors & Healthcare Professionals

Want us to check this for you? Get a free review →

What software do I need?

Making Tax Digital (MTD) requirements mean many professionals will need MTD-compatible accounting software. From April 2026, this applies to individuals with qualifying income over £50,000. Medical.Accountants works with major cloud-based platforms to streamline your bookkeeping. We recommend the most suitable software based on your practice size and complexity.

Check the official guidance · www.gov.ukWant us to check this for you? Get a free review →

What are quarterly updates?

Quarterly updates are digital submissions of income and expenses required under Making Tax Digital for Income Tax. These will be mandatory for qualifying individuals from 6 April 2026. They provide HMRC with a regular summary of your business performance. Medical.Accountants will manage these submissions to ensure your practice remains compliant.

Check the official guidance · www.gov.ukCheck the official guidance · www.gov.uk

Help with this question: Bookkeeping & Making Tax Digital for Doctors & Healthcare Professionals

Want us to check this for you? Get a free review →

What happens if I miss a quarterly update?

MTD for Income Tax uses a points-based late-submission regime. HMRC will not award points for missed quarterly updates in the 2026/27 tax year, but you must still submit the updates before submitting your tax return. Later years have different rules. Check the HMRC guidance for your start year; tax return and payment obligations remain.

Check the official guidance · www.gov.ukCheck the official guidance · www.gov.uk

Help with this question: Bookkeeping & Making Tax Digital for Doctors & Healthcare Professionals

Want us to check this for you? Get a free review →

Quick quote

See what you could save — get a fixed fee in one working day

Three fields. No obligation. A specialist replies, not a sales team.

Packages for your working life

Accountancy packages for healthcare professionals

Self-employed income, a limited company, PAYE or a mixture: start with the support that matches how you actually work. We check your status and agree the scope and fee before starting.

Self-employed accountants for healthcare professionals packages

For genuine sole-trader income. We prepare your business accounts and Self Assessment, review allowable expenses and explain payments on account.

  • Sole-trader accounts and personal tax return
  • Allowable business expenses reviewed
  • Tax reserve and payment deadline guidance
  • MTD support scoped separately where required

Fixed fee quoted after a review

Discuss this package

Limited company accountants for healthcare professionals packages

For clinicians working through their own company. Choose Essential/Compliance, Core/Complete or Growth according to your accounts, bookkeeping and payroll needs.

  • Statutory accounts and Corporation Tax return
  • One director return for salary and dividends from the same company
  • Confirmation statement support; filing fee extra
  • Bookkeeping, VAT and payroll according to your chosen plan

Company packages from £45.83 + VAT / month

Compare company packages

Personal tax return packages for healthcare professionals

For employed clinicians, partners and people with mixed income who need a return. We check whether Self Assessment is required and reconcile the relevant income, expenses and pension tax information.

  • Self Assessment requirement checked
  • PAYE and other income reconciled
  • Eligible employment expenses reviewed
  • Pension tax work agreed separately where needed

Fixed fee quoted after a review

Discuss this package

Employment status is determined by the facts, not the package you choose. PAYE, umbrella and partnership arrangements may also apply. A limited company does not override IR35 or off-payroll rules, and not every employed clinician needs a tax return.

Overpaid tax?

Tax refund support for healthcare professionals

We review tax codes, eligible professional expenses and overpaid tax, then prepare a claim where you qualify. A refund is not guaranteed; HMRC decides the claim.

£249 + VAT

For refunds up to £5,000, our fee is £249 plus VAT. For refunds above £5,000, add 5% of only the amount above £5,000 to the £249 fee. VAT applies to the total professional fee.

Example: a £6,000 refund means £249 + £50 = £299 plus VAT.

Professional fee, excluding VAT

£249

Ask about a tax refund

This illustrates the fee only, not whether you qualify or how much HMRC will refund. We agree the claim scope and payment terms before work starts.

What's included

Limited company packages — compare what's included

Essential/Compliance

For locums, salaried GPs and dentists with a limited company

from £45.83 + VAT /month

  • FRS 105 or FRS 102 1A statutory accounts
  • Corporation tax return (CT600) and tax computation
  • Confirmation statement preparation and filing support
  • One director Self Assessment return
  • Deadline reminders ahead of every filing date

Core/Complete

For private practice, consultants and associate dentists

from £62.50 + VAT /month

  • Everything in Essential/Compliance
  • Monthly bookkeeping and bank reconciliation
  • Quarterly Making Tax Digital VAT returns
  • Director payroll with RTI filing and pension submissions
  • Quarterly review call on numbers and tax position

Growth

For clinics, dental practices and growing medical teams

from £75.00 + VAT /month

  • Everything in Core/Complete
  • Payroll for up to five employees

Prices exclude VAT. Making Tax Digital quarterly updates available as an add-on. Compare fees

Why clinicians trust us

Chartered accountants who know the NHS

  • ACCOTAX has served over 5,000 clients.
  • Regulated chartered accountants (ICAEW and ACCA).
  • Founded by Waqas Sagar ACA FCCA FMAAT, with 18+ years' experience.

Reviewed by Waqas Sagar ACA FCCA FMAAT

Chartered accountant and founder of ACCOTAX. Last reviewed October 2026.

Get my fixed-fee quote

How it works

  1. 01

    Free call

    A 15-minute chat about your income, structure and deadlines.

  2. 02

    Onboarding in 48 hours

    We set up your records, software and HMRC agent access.

  3. 03

    We handle the rest

    HMRC, NHS Pensions and every deadline, with reminders before each one.

Free resource

Get the nurse expenses checklist free

Tell us where to send it and we'll email it to you.

Your questions, answered

When are MTD quarterly updates due?
Making Tax Digital for Income Tax applies from 6 April 2026 to sole traders and landlords whose qualifying income (gross self-employment plus property income) is over £50,000, falling to £30,000 from April 2027 and £20,000 from April 2028. PAYE salary does not count. Mtd quarterly update deadlines for healthcare professionals trading through a limited company or a partnership are not brought in yet. We set up compatible software and file the quarterly updates for you.
What happens if I miss an MTD update?
Making Tax Digital for Income Tax applies from 6 April 2026 to sole traders and landlords whose qualifying income (gross self-employment plus property income) is over £50,000, falling to £30,000 from April 2027 and £20,000 from April 2028. PAYE salary does not count. Mtd quarterly update deadlines for healthcare professionals trading through a limited company or a partnership are not brought in yet. We set up compatible software and file the quarterly updates for you.
How much does an accountant for self-employed clinicians cost?
Our packages for mtd quarterly update deadlines for healthcare professionals start at £45.83 + VAT a month, with Core at £62.50 and Growth at £75 + VAT. The right package depends on your income sources, whether you trade through a company and any payroll, VAT or pension work. We confirm the exact fee in writing before any work begins, so there are no surprise invoices.
Do self-employed clinicians need to comply with Making Tax Digital?
Making Tax Digital for Income Tax applies from 6 April 2026 to sole traders and landlords whose qualifying income (gross self-employment plus property income) is over £50,000, falling to £30,000 from April 2027 and £20,000 from April 2028. PAYE salary does not count. Mtd quarterly update deadlines for healthcare professionals trading through a limited company or a partnership are not brought in yet. We set up compatible software and file the quarterly updates for you.
How do I switch to Medical.Accountants?
Switching takes minutes on your side. You sign our engagement letter, we contact your previous accountant for professional clearance and records, and we take over HMRC and Companies House authorisations. You can switch mid-year; we pick up from the last filed return.

Speak to a specialist today

Leave your details and we'll call you back, or book a free review straight away.

Book a free 15-min tax review

Related healthcare expertise

VAT Registration & Returns for Doctors & Healthcare ProfessionalsBookkeeping & Making Tax Digital for Doctors & Healthcare ProfessionalsSelf Assessment Tax Returns for Doctors & Healthcare ProfessionalsAccountants for doctors and GPs in the UKLocum doctor accountants: tax, IR35 and NHS pensions
Accountants for healthcare professionalsHealthcare tax questions answered

General information for the 2026/27 tax year, prepared from the official guidance linked below. It is not personalised tax or regulated financial advice. Rules and circumstances can change; confirm your position before acting.

Official sources referred to on this page: HMRC Making Tax Digital for Income Tax (GOV.UK); HMRC MTD software list.

Official guidance

Get my quote