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NHS Pension Tax & Annual Allowance for Salaried GPs
NHS Pension Tax & Annual Allowance for salaried GPs. Annual allowance charges? We fix it: fixed fees, ICAEW-regulated specialists. Free quote.
What does nhs pension tax & annual allowance for salaried GPs involve?
Our nhs pension tax & annual allowance service for salaried gps covers annual allowance calculations, scheme Pays elections, certificate/form management. It solves the problems we see most often — salaried gps: Annual allowance charges, Scheme Pays deadlines, McCloud remedy, wrong pension certificates — on a fixed monthly fee agreed in writing before any work starts.
Fixed fees, specialist healthcare accountants, and every HMRC and NHS Pensions deadline handled.
- Fixed monthly fee — no surprises
- Specialist in NHS pension and healthcare tax
- Onboarding within 48 hours
- ICAEW & ACCA regulated
- 5,000+ clients served by ACCOTAX
- Specialist healthcare accountants
Reviewed by Waqas Sagar ACA FCCA FMAAT, Founder of ACCOTAX, 18+ years' experience · Last reviewed: 8 October 2026 · Updated for the 2026/27 tax year
Medical.Accountants by ACCOTAX, ICAEW/ACCA-regulated chartered accountants, London, serving clients across the UK. Over 5,000 clients served.
Key takeaways
- Problems solved: Salaried gps: Annual allowance charges, Scheme Pays deadlines, McCloud remedy, wrong pension certificates.
- Included: Annual allowance calculations.
- Included: Scheme Pays elections.
- Included: certificate/form management.
Free guide: The Doctor's Tax & NHS Pension Handbook 2026/27
Get the free guideWhich accountancy support fits your income?
Start with how you are paid. Different income sources can need different accounts, returns and expense checks.
| How you work | What we check | Support to explore |
|---|---|---|
| Employed or umbrella (PAYE) | Tax codes, eligible employment expenses and whether a tax return is needed. | Healthcare tax refund support |
| Genuinely self-employed | Business income and expenses, Self Assessment and MTD eligibility. | Healthcare Self Assessment service |
| Your own limited company | Company accounts, Corporation Tax, director income and off-payroll status where relevant. | Healthcare limited company accounts |
| Partnership | Practice accounts, allocated profit and each partner’s personal tax position. | Healthcare partnership accounts |
Sound familiar?
Problems we fix for GP partners and practices
- "Our partnership accounts and profit shares are a headache every year."
- "The Type 1 certificate and pension year-end deadline always sneak up on us."
- "I've received an annual allowance charge letter."
- "Partners draw too much and there's nothing left for tax."
- "A partner is leaving and a new one is joining."
- "Reconciling PCN and ARRS funding takes forever."
What it's costing you
Leaving it unfixed is rarely free
- Overpaid tax
- Unclaimed expenses and wrong tax codes mean paying more than you owe, year after year.
- HMRC penalties and interest
- Late returns attract automatic penalties, plus interest on tax paid late.
- Lost evenings
- Hours spent on forms, invoices and spreadsheets after a long shift.
General examples — your position depends on your own figures.
How we solve it
What we actually do for you
Partnership accounts
Clear profit-share schedules and accounts every partner understands.
Pension certificate service
Type 1 and Type 2 certificates prepared ahead of the deadline.
Drawings planning
Monthly drawings set against a realistic tax reserve.
PCN reporting and payroll
ARRS reconciliation and practice payroll run for you.
How we help
Annual allowance calculations
Part of our nhs pension tax & annual allowance service for salaried gps, delivered on a fixed fee.
Scheme Pays elections
Part of our nhs pension tax & annual allowance service for salaried gps, delivered on a fixed fee.
certificate/form management
Part of our nhs pension tax & annual allowance service for salaried gps, delivered on a fixed fee.
carry forward planning
Part of our nhs pension tax & annual allowance service for salaried gps, delivered on a fixed fee.
Your questions answered
How is my annual allowance charge calculated?
The annual allowance is the amount of pension growth you can have each tax year before a tax charge, £60,000 for 2026/27. For high earners it tapers: if threshold income exceeds £200,000 and adjusted income exceeds £260,000, the allowance falls by £1 for every £2 above £260,000, down to £10,000. NHS pension growth is measured as a defined benefit input, not your contributions.
Check the official guidance · www.gov.ukWant us to check this for you? Get a free review →When is the Scheme Pays deadline?
Scheme Pays lets you ask the NHS Pension Scheme to pay an annual allowance charge on your behalf. The scheme pays HMRC and reduces your future pension to recover the cost. You still report the charge on your Self Assessment return, and deadlines apply to the election, so the calculation should be done early.
Want us to check this for you? Get a free review →What is carry forward?
Carry forward allows you to use unused pension annual allowance from the three previous tax years. This can increase your current year contribution limit beyond the standard £60,000 allowance. You must have been a member of a registered pension scheme during those prior years. It is a vital tool for clinicians managing their NHS pension growth.
Check the official guidance · www.gov.ukWant us to check this for you? Get a free review →How does McCloud affect my pension?
Most NHS doctors and many healthcare staff are members of the NHS Pension Scheme. Contributions are deducted through payroll, and locum or private work can count only through the correct forms. High earners should check the annual allowance each year, as pension growth can trigger a tax charge.
Check the official guidance · www.gov.ukWant us to check this for you? Get a free review →Do I need to report the charge on my tax return?
Many salaried gps must file a Self Assessment return: you need one if you have untaxed income such as private, locum or self-employed work. A high PAYE salary alone does not require Self Assessment for 2026/27; check HMRC's current criteria and any notice to file. The online filing and payment deadline is 31 January after the tax year ends. Under the non-MTD rules, late filing normally triggers an initial £100 penalty, with further penalties for longer delays. A different regime applies from the tax year you join MTD for Income Tax.
Check the official guidance · www.gov.ukHelp with this question: Self Assessment Tax Returns for Salaried GPs
Want us to check this for you? Get a free review →Can I reduce future charges?
Future tax charges can often be managed through proactive planning and utilising available allowances. This might involve reviewing your pension contributions or business structure. The NHS annual allowance is currently £60,000, though this tapers for high earners. We help you understand how these legislative limits apply to your projected healthcare income.
Want us to check this for you? Get a free review →What pension certificates do I need?
GP partners report NHS pensionable profit to the scheme each year on a certificate based on the practice accounts; locum GPs use the locum A and B forms to pay contributions on each piece of pensionable work. Late or wrong forms cause missing service and incorrect pension records. We prepare the figures and check them against the accounts before submission.
Check the official guidance · www.gov.ukHelp with this question: Payroll & Pensions for Doctors & Healthcare Professionals
Want us to check this for you? Get a free review →How much does NHS pension tax help cost?
Our packages for salaried gps start at £45.83 + VAT a month, with Core at £62.50 and Growth at £75 + VAT. The right package depends on your income sources, whether you trade through a company and any payroll, VAT or pension work. We confirm the exact fee in writing before any work begins, so there are no surprise invoices.
Check the official guidance · www.gov.ukWant us to check this for you? Get a free review →Do NHS doctors need to file a Self Assessment tax return?
Many salaried gps must file a Self Assessment return: you need one if you have untaxed income such as private, locum or self-employed work. A high PAYE salary alone does not require Self Assessment for 2026/27; check HMRC's current criteria and any notice to file. The online filing and payment deadline is 31 January after the tax year ends. Under the non-MTD rules, late filing normally triggers an initial £100 penalty, with further penalties for longer delays. A different regime applies from the tax year you join MTD for Income Tax.
Check the official guidance · www.gov.ukHelp with this question: Self Assessment Tax Returns for Salaried GPs
Want us to check this for you? Get a free review →Can I claim tax relief on GMC, BMA and royal college fees?
You can claim tax relief on costs incurred wholly and exclusively for your work: HMRC-approved professional fees such as GMC, NMC, GDC or HCPC registration and approved royal college and union subscriptions, uniform laundering, and business mileage between workplaces. Ordinary commuting and most exam or training costs for new qualifications are not allowable. Employees can claim back up to four tax years.
Check the official guidance · www.gov.ukWant us to check this for you? Get a free review →How far back can I claim a tax refund for professional fees?
You can claim tax relief on costs incurred wholly and exclusively for your work: HMRC-approved professional fees such as GMC, NMC, GDC or HCPC registration and approved royal college and union subscriptions, uniform laundering, and business mileage between workplaces. Ordinary commuting and most exam or training costs for new qualifications are not allowable. Employees can claim back up to four tax years.
Check the official guidance · www.gov.ukHelp with this question: Tax Refunds for Salaried GPs
Want us to check this for you? Get a free review →What is the McCloud remedy and how does it affect me?
The McCloud remedy addresses age discrimination in public service pension schemes, including the NHS pension. It allows eligible members to choose between different scheme benefits for the remedy period. This choice can impact your tax position and annual allowance calculations. We recommend reviewing your pension statements annually to monitor for potential tax charges.
Want us to check this for you? Get a free review →Does the lifetime allowance still apply?
The lifetime allowance was officially abolished in April 2024. While the limit on total pension savings is gone, new allowances now govern tax-free lump sums. The NHS annual allowance remains at £60,000 for most individuals. We help medical professionals monitor their contributions to ensure compliance with current legislation.
Want us to check this for you? Get a free review →Quick quote
See what you could save — get a fixed fee in one working day
Three fields. No obligation. A specialist replies, not a sales team.
Packages for your working life
Accountancy packages for GPs
Self-employed income, a limited company, PAYE or a mixture: start with the support that matches how you actually work. We check your status and agree the scope and fee before starting.
Self-employed accountants for GPs packages
For genuine sole-trader income. We prepare your business accounts and Self Assessment, review allowable expenses and explain payments on account.
- Sole-trader accounts and personal tax return
- Allowable business expenses reviewed
- Tax reserve and payment deadline guidance
- MTD support scoped separately where required
Fixed fee quoted after a review
Discuss this packageLimited company accountants for GPs packages
For clinicians working through their own company. Choose Essential/Compliance, Core/Complete or Growth according to your accounts, bookkeeping and payroll needs.
- Statutory accounts and Corporation Tax return
- One director return for salary and dividends from the same company
- Confirmation statement support; filing fee extra
- Bookkeeping, VAT and payroll according to your chosen plan
Company packages from £45.83 + VAT / month
Compare company packagesPersonal tax return packages for GPs
For employed clinicians, partners and people with mixed income who need a return. We check whether Self Assessment is required and reconcile the relevant income, expenses and pension tax information.
- Self Assessment requirement checked
- PAYE and other income reconciled
- Eligible employment expenses reviewed
- Pension tax work agreed separately where needed
Fixed fee quoted after a review
Discuss this packageEmployment status is determined by the facts, not the package you choose. PAYE, umbrella and partnership arrangements may also apply. A limited company does not override IR35 or off-payroll rules, and not every employed clinician needs a tax return.
Overpaid tax?
Tax refund support for GPs
We review tax codes, eligible professional expenses and overpaid tax, then prepare a claim where you qualify. A refund is not guaranteed; HMRC decides the claim.
£249 + VAT
For refunds up to £5,000, our fee is £249 plus VAT. For refunds above £5,000, add 5% of only the amount above £5,000 to the £249 fee. VAT applies to the total professional fee.
Example: a £6,000 refund means £249 + £50 = £299 plus VAT.
Professional fee, excluding VAT
£249
This illustrates the fee only, not whether you qualify or how much HMRC will refund. We agree the claim scope and payment terms before work starts.
What's included
Limited company packages — compare what's included
Essential/Compliance
For locums, salaried GPs and dentists with a limited company
from £45.83 + VAT /month
- FRS 105 or FRS 102 1A statutory accounts
- Corporation tax return (CT600) and tax computation
- Confirmation statement preparation and filing support
- One director Self Assessment return
- Deadline reminders ahead of every filing date
Core/Complete
For private practice, consultants and associate dentists
from £62.50 + VAT /month
- Everything in Essential/Compliance
- Monthly bookkeeping and bank reconciliation
- Quarterly Making Tax Digital VAT returns
- Director payroll with RTI filing and pension submissions
- Quarterly review call on numbers and tax position
Growth
For clinics, dental practices and growing medical teams
from £75.00 + VAT /month
- Everything in Core/Complete
- Payroll for up to five employees
Prices exclude VAT. Making Tax Digital quarterly updates available as an add-on. Compare fees
Why clinicians trust us
Chartered accountants who know the NHS
- ACCOTAX has served over 5,000 clients.
- Regulated chartered accountants (ICAEW and ACCA).
- Founded by Waqas Sagar ACA FCCA FMAAT, with 18+ years' experience.
Reviewed by Waqas Sagar ACA FCCA FMAAT
Chartered accountant and founder of ACCOTAX. Last reviewed October 2026.
Get my fixed-fee quoteHow it works
- 01
Free call
A 15-minute chat about your income, structure and deadlines.
- 02
Onboarding in 48 hours
We set up your records, software and HMRC agent access.
- 03
We handle the rest
HMRC, NHS Pensions and every deadline, with reminders before each one.
Free resource
Get the GP year-end deadline calendar free
Tell us where to send it and we'll email it to you.
Your questions, answered
- Do salaried GPs need nhs pension tax & annual allowance?
- The annual allowance is the amount of pension growth you can have each tax year before a tax charge, £60,000 for 2026/27. For high earners it tapers: if threshold income exceeds £200,000 and adjusted income exceeds £260,000, the allowance falls by £1 for every £2 above £260,000, down to £10,000. NHS pension growth is measured as a defined benefit input, not your contributions.
- What does nhs pension tax & annual allowance for salaried GPs include?
- The annual allowance is the amount of pension growth you can have each tax year before a tax charge, £60,000 for 2026/27. For high earners it tapers: if threshold income exceeds £200,000 and adjusted income exceeds £260,000, the allowance falls by £1 for every £2 above £260,000, down to £10,000. NHS pension growth is measured as a defined benefit input, not your contributions.
- How much does it cost for salaried GPs?
- Our packages for salaried gps start at £45.83 + VAT a month, with Core at £62.50 and Growth at £75 + VAT. The right package depends on your income sources, whether you trade through a company and any payroll, VAT or pension work. We confirm the exact fee in writing before any work begins, so there are no surprise invoices.
- What are the deadlines for salaried GPs?
- Many salaried gps must file a Self Assessment return: you need one if you have untaxed income such as private, locum or self-employed work. A high PAYE salary alone does not require Self Assessment for 2026/27; check HMRC's current criteria and any notice to file. The online filing and payment deadline is 31 January after the tax year ends. Under the non-MTD rules, late filing normally triggers an initial £100 penalty, with further penalties for longer delays. A different regime applies from the tax year you join MTD for Income Tax.
- Can I switch to you mid-year?
- Switching takes minutes on your side. You sign our engagement letter, we contact your previous accountant for professional clearance and records, and we take over HMRC and Companies House authorisations. You can switch mid-year; we pick up from the last filed return.
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Book a free 15-min tax reviewRelated healthcare expertise
General information for the 2026/27 tax year, prepared from the official guidance linked below. It is not personalised tax or regulated financial advice. Rules and circumstances can change; confirm your position before acting.
Official sources referred to on this page: NHSBSA annual allowance and Scheme Pays; HMRC Pension schemes annual allowance (GOV.UK); NHSBSA McCloud remedy; HMRC lifetime allowance abolition; HMRC: claim tax relief for job expenses (P87); HMRC approved professional bodies list (List 3); NHSBSA Pension Savings Statements; HMRC tax codes guidance.